II.
LibrarySkill overview
Reference · livelib-skill:bioinformatics--tmb-msi-calculator
tmb-msi-calculator overview
Tumor mutation burden and microsatellite instability calculation skill for immunotherapy biomarkers
Attributes
displayName
tmb-msi-calculator
description
Tumor mutation burden and microsatellite instability calculation skill for immunotherapy biomarkers
libraryPath
library/specializations/domains/science/bioinformatics/skills/tmb-msi-calculator/SKILL.md
specialization
bioinformatics
contentSummary
# TMB-MSI Calculator Skill
## Purpose
Calculate tumor mutation burden and microsatellite instability for immunotherapy biomarker assessment.
## Capabilities
- TMB calculation from VCF
- MSI status determination
- Neoantigen prediction
- HLA typing integration
- Biomarker thresholds
- Clinical repo
Outgoing edges
lib_applies_to_domain1
- domain:bioinformatics·DomainBioinformatics
lib_belongs_to_specialization2
- specialization:biomedical-informatics·SpecializationBiomedical Informatics
- specialization:bioinformatics·SpecializationBioinformatics
lib_implements_workflow1
- workflow:experiment-design·WorkflowExperiment Design
lib_involves_role2
- role:biomedical-engineer·RoleBiomedical Engineer
- role:research-scientist·RoleResearch Scientist
lib_requires_skill_area3
- skill-area:statistical-analysis·SkillAreaStatistical Analysis
- skill-area:data-analysis·SkillAreaData Analysis
- skill-area:python-data-pipelines·SkillAreaPython Data Pipelines
Incoming edges
None.