{
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  "_file": "generated-library/skills.yaml",
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  "attributes": {
    "displayName": "gatk-variant-caller",
    "description": "GATK best practices skill for germline and somatic variant calling with joint genotyping",
    "libraryPath": "library/specializations/domains/science/bioinformatics/skills/gatk-variant-caller/SKILL.md",
    "specialization": "bioinformatics",
    "contentSummary": "# GATK Variant Caller Skill\n\n## Purpose\nProvide GATK best practices for germline and somatic variant calling with joint genotyping support.\n\n## Capabilities\n- HaplotypeCaller execution\n- Base quality score recalibration (BQSR)\n- Variant quality score recalibration (VQSR)\n- Joint genotyping across co"
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